3) Lines 246, 333, ... : java.lang.ClassNotFoundException: sun.java2d.opengl.OGLUtilities cannot be found by com.io7m.bundles.org.jogamp.jogl_2.3.2
Platform: Java Version: 1.8.0_112 (1.8.0u112), VM: Java HotSpot(TM) 64-Bit Server VM, Runtime: Java(TM) SE Runtime Environment
Platform: Java Vendor: Oracle Corporation, http://java.oracle.com/, JavaSE: true, Java6: true, AWT enabled: true
This hints that your Java 8 implementation prevents you to initialize the class OGLUtilities, a class that is part of AWT java2d and shipped with the JVM, thus it should be available, however we have recently seen oracles JVM implementation to restrict initialization of AWT classes from outside the JVM runtime classes.
It may be similar to the situation with recent JVM implementations of Java 9
You can try add the following JVM argument and check if that fixes your issue.