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I am not sure to understand... Which javac's flag are you talking about? As far as I know, there is no particular flag to use at compile time to be able to debug java code.
Maybe would you like to compile the c native code with debug symbols? In that case, I found the "c.compiler.debug" flag in the xml files in the "make" subdirectory of Jogl source code that did the trick for me.
Otherwise, may you precise your need?
-Cyrille
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