JVM Crash upon glDrawArrays()
Locked
 
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Hi, I'm trying to use shaders and vertex array objects with OpenGL 2.1, but the JVM is crashing upon the command glDrawArrays.
The shader program linked and compiled properly (checked using gl.glGetProgramiv(programHandle, GL2.GL_LINK_STATUS, intBuffer)), and using glGetError() throughout the code returned no errors. Here is my code. VAO setup:
this.vertexArrayObjects = new int[1];
gl.glGenVertexArrays(1, vertexArrayObjects, 0);
gl.glBindVertexArray(vertexArrayObjects[0]);
int[] buffers = new int[2];
gl.glGenBuffers(2, buffers, 0);
gl.glBindBuffer(GL2.GL_ARRAY_BUFFER, buffers[0]);
float[] triangleVertices = new float[] {
0.5f, 0.5f, 0.0f, 1.0f,
0.25f, 0.25f, 0.0f, 1.0f,
0.75f, 0.25f, 0.0f, 1.0f
};
gl.glBufferData(GL2.GL_ARRAY_BUFFER, triangleVertices.length * Float.SIZE / 8,
Buffers.newDirectFloatBuffer(triangleVertices), GL2.GL_STATIC_DRAW);
gl.glEnableVertexAttribArray(defaultAttributeLocations.get("vVertex"));
gl.glVertexAttribPointer(defaultAttributeLocations.get("vVertex"), 4, GL2.GL_FLOAT, false, 0, 0);
// Bind buffer for colors, transfer data
gl.glBindBuffer(GL2.GL_ARRAY_BUFFER, buffers[1]);
float[] triangleColors = new float[] {
0.5f, 0.5f, 0.5f, 1.0f,
0.5f, 0.5f, 0.5f, 1.0f,
0.5f, 0.5f, 0.5f, 1.0f
};
gl.glBufferData(GL2.GL_ARRAY_BUFFER, triangleColors.length * Float.SIZE / 8,
Buffers.newDirectFloatBuffer(triangleColors), GL2.GL_STATIC_DRAW);
gl.glEnableVertexAttribArray(defaultAttributeLocations.get("vColor"));
Drawing code:
@Override
public void execute(GL2 gl, GraphicsData graphicsData) {
// TODO Auto-generated method stub
System.out.println("Test shader scene executing");
gl.glBindVertexArray(this.vertexArrayObjects[0]);
gl.glDrawArrays(GL2.GL_TRIANGLES, 0, 3);
}
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Administrator
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Hi
Please post the error logs. Try to use a VBO without VAO as a first step, validate that your code works as is and then replace the "old" calls (glVertexPointer, ...) by a VAO.
Julien Gouesse | Personal blog | Website
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This post was updated on .
Sorry about the late reply.
Here is the error: # # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0x000000004000ae28, pid=14913, tid=140553053230848 # # JRE version: 6.0_26-b03 # Java VM: Java HotSpot(TM) 64-Bit Server VM (20.1-b02 mixed mode linux-amd64 compressed oops) # Problematic frame: # C 0x000000004000ae28 float+0x1ddfbe28 # # An error report file with more information is saved as: # /home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/hs_err_pid14913.log # # If you would like to submit a bug report, please visit: # http://java.sun.com/webapps/bugreport/crash.jsp # The complete log is: # # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0x000000004000ae28, pid=14913, tid=140553053230848 # # JRE version: 6.0_26-b03 # Java VM: Java HotSpot(TM) 64-Bit Server VM (20.1-b02 mixed mode linux-amd64 compressed oops) # Problematic frame: # C 0x000000004000ae28 # # If you would like to submit a bug report, please visit: # http://java.sun.com/webapps/bugreport/crash.jsp # The crash happened outside the Java Virtual Machine in native code. # See problematic frame for where to report the bug. # --------------- T H R E A D --------------- Current thread (0x0000000043ed1000): JavaThread "AWT-EventQueue-0" [_thread_in_native, id=15011, stack(0x00007fd50ebf5000,0x00007fd50ecf6000)] siginfo:si_signo=SIGSEGV: si_errno=0, si_code=1 (SEGV_MAPERR), si_addr=0x0000000000000000 Registers: RAX=0x00007fd507911468, RBX=0x00000000415fb000, RCX=0x0000000000000000, RDX=0x0000000000000003 RSP=0x00007fd50ecf0c38, RBP=0x000000003f800000, RSI=0x0000000000000000, RDI=0x0000000000000000 R8 =0x00007fd510040e50, R9 =0x0000000009420000, R10=0x0000000000000007, R11=0x0000000000000000 R12=0x0000000000000003, R13=0x00007fd5100c53c8, R14=0x0000000000000000, R15=0x0000000000000000 RIP=0x000000004000ae28, EFLAGS=0x0000000000010246, CSGSFS=0x0000000000000033, ERR=0x0000000000000004 TRAPNO=0x000000000000000e Top of Stack: (sp=0x00007fd50ecf0c38) 0x00007fd50ecf0c38: 00000000415fb000 00007fd507911468 0x00007fd50ecf0c48: 0000000000000060 00000000415fb000 0x00007fd50ecf0c58: 00007fd509f0099f 00007fd510040e50 0x00007fd50ecf0c68: 0000000400000003 00000000434adb38 0x00007fd50ecf0c78: 0000000000000004 0000000043ed1000 0x00007fd50ecf0c88: 00007fd509f0222d 00007fd507911468 0x00007fd50ecf0c98: 00000006cb167cd0 00007fd50ecf0d10 0x00007fd50ecf0ca8: 0000000000000000 00000006cb167cd0 0x00007fd50ecf0cb8: 00007fd50ecf0dd8 0000000043ed1000 0x00007fd50ecf0cc8: 00007fd5087be453 0000000043ed1000 0x00007fd50ecf0cd8: 00007fd50b23d360 000000030000023c 0x00007fd50ecf0ce8: 0000000400000000 00007fd50ecf0dd8 0x00007fd50ecf0cf8: 0000000043ed11d0 00007fd50ecf0d90 0x00007fd50ecf0d08: 00007fd50b23d360 00007fd50ecf0d90 0x00007fd50ecf0d18: 00007fd518595d6e 00007fd50ecf0e20 0x00007fd50ecf0d28: 00007fd50ecf0db0 0000000042c67c20 0x00007fd50ecf0d38: 0000000042c67ff8 0000000043ed1000 0x00007fd50ecf0d48: 00007fd50ecf0dd8 00007fd50ecf0d50 0x00007fd50ecf0d58: 00000006cb167cd0 00007fd50ecf0dd8 0x00007fd50ecf0d68: 00000006cb3959c0 0000000000000000 0x00007fd50ecf0d78: 00000006cb167cd0 0000000000000000 0x00007fd50ecf0d88: 00007fd50ecf0db0 00007fd50ecf0e20 0x00007fd50ecf0d98: 00007fd51858aa82 0000000000000000 0x00007fd50ecf0da8: 00007fd518592f58 00007fd50b23d360 0x00007fd50ecf0db8: 0000000043ed1000 0000000000000003 0x00007fd50ecf0dc8: 0000000000000000 0000000000000004 0x00007fd50ecf0dd8: 000000079b549c38 00007fd50ecf0de0 0x00007fd50ecf0de8: 00000006cb167bef 00007fd50ecf0e58 0x00007fd50ecf0df8: 00000006cb3959c0 0000000000000000 0x00007fd50ecf0e08: 00000006cb167c00 00007fd50ecf0db0 0x00007fd50ecf0e18: 00007fd50ecf0e40 00007fd50ecf0ea0 0x00007fd50ecf0e28: 00007fd51858af5c 00007fd50b23d360 Instructions: (pc=0x000000004000ae28) 0x000000004000ae08: 68 0c 48 be d8 fb 63 41 00 00 00 00 48 8b 36 48 0x000000004000ae18: 8b b6 88 03 00 00 48 8b f9 48 c1 e7 04 48 03 f7 0x000000004000ae28: 8b 3e 8b 6e 04 89 78 10 89 68 14 8b 7e 08 8b 6e 0x000000004000ae38: 0c 89 78 18 89 68 1c 48 83 c0 20 ff c1 ff ca 75 Register to memory mapping: RAX=0x00007fd507911468 is an unknown value RBX=0x00000000415fb000 is an unknown value RCX=0x0000000000000000 is an unknown value RDX=0x0000000000000003 is an unknown value RSP=0x00007fd50ecf0c38 is pointing into the stack for thread: 0x0000000043ed1000 RBP=0x000000003f800000 is an unknown value RSI=0x0000000000000000 is an unknown value RDI=0x0000000000000000 is an unknown value R8 =0x00007fd510040e50 is an unknown value R9 =0x0000000009420000 is an unknown value R10=0x0000000000000007 is an unknown value R11=0x0000000000000000 is an unknown value R12=0x0000000000000003 is an unknown value R13=0x00007fd5100c53c8 is an unknown value R14=0x0000000000000000 is an unknown value R15=0x0000000000000000 is an unknown value Stack: [0x00007fd50ebf5000,0x00007fd50ecf6000], sp=0x00007fd50ecf0c38, free space=1007k Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code) C 0x000000004000ae28 [error occurred during error reporting (printing native stack), id 0xb] Java frames: (J=compiled Java code, j=interpreted, Vv=VM code) j jogamp.opengl.gl4.GL4bcImpl.dispatch_glDrawArrays1(IIIJ)V+0 j jogamp.opengl.gl4.GL4bcImpl.glDrawArrays(III)V+39 j org.cytoscape.opengl.internal.graphics.rendering.TestSceneProcedureShader.execute(Ljavax/media/opengl/GL2;Lorg/cytoscape/opengl/internal/graphics/data/GraphicsData;)V+24 j org.cytoscape.opengl.internal.graphics.MainViewGraphicsHandler.drawScene(Ljavax/media/opengl/GL2;Lorg/cytoscape/opengl/internal/graphics/data/GraphicsData;)V+41 j org.cytoscape.opengl.internal.graphics.MainViewGLEventListener.display(Ljavax/media/opengl/GLAutoDrawable;)V+42 j jogamp.opengl.GLDrawableHelper.displayImpl(Ljavax/media/opengl/GLAutoDrawable;)V+58 j jogamp.opengl.GLDrawableHelper.display(Ljavax/media/opengl/GLAutoDrawable;)V+2 j javax.media.opengl.awt.GLJPanel$Updater.display(Ljavax/media/opengl/GLAutoDrawable;)V+185 j jogamp.opengl.GLDrawableHelper.displayImpl(Ljavax/media/opengl/GLAutoDrawable;)V+58 j jogamp.opengl.GLDrawableHelper.display(Ljavax/media/opengl/GLAutoDrawable;)V+2 j jogamp.opengl.GLAutoDrawableBase$2.run()V+59 j jogamp.opengl.GLDrawableHelper.invokeGLImpl(Ljavax/media/opengl/GLDrawable;Ljavax/media/opengl/GLContext;Ljava/lang/Runnable;Ljava/lang/Runnable;Ljavax/media/opengl/GLAutoDrawable;)V+137 j jogamp.opengl.GLDrawableHelper.invokeGL(Ljavax/media/opengl/GLDrawable;Ljavax/media/opengl/GLContext;Ljava/lang/Runnable;Ljava/lang/Runnable;)V+85 j jogamp.opengl.GLPbufferImpl.display()V+39 j javax.media.opengl.awt.GLJPanel$PbufferBackend.doPaintComponentImpl()V+4 j javax.media.opengl.awt.GLJPanel$AbstractReadbackBackend.doPaintComponent(Ljava/awt/Graphics;)V+1 j javax.media.opengl.awt.GLJPanel.paintComponent(Ljava/awt/Graphics;)V+174 j javax.swing.JComponent.paint(Ljava/awt/Graphics;)V+290 j javax.swing.JComponent.paintChildren(Ljava/awt/Graphics;)V+512 j javax.swing.JComponent.paint(Ljava/awt/Graphics;)V+322 j javax.swing.JComponent.paintChildren(Ljava/awt/Graphics;)V+512 j javax.swing.JComponent.paint(Ljava/awt/Graphics;)V+322 j javax.swing.JLayeredPane.paint(Ljava/awt/Graphics;)V+73 j javax.swing.JComponent.paintChildren(Ljava/awt/Graphics;)V+512 j javax.swing.JComponent.paint(Ljava/awt/Graphics;)V+322 j javax.swing.JComponent.paintChildren(Ljava/awt/Graphics;)V+512 j javax.swing.JComponent.paint(Ljava/awt/Graphics;)V+322 j javax.swing.JComponent.paintChildren(Ljava/awt/Graphics;)V+512 j javax.swing.JComponent.paint(Ljava/awt/Graphics;)V+322 j javax.swing.JLayeredPane.paint(Ljava/awt/Graphics;)V+73 j javax.swing.JComponent.paintToOffscreen(Ljava/awt/Graphics;IIIIII)V+41 j javax.swing.BufferStrategyPaintManager.paint(Ljavax/swing/JComponent;Ljavax/swing/JComponent;Ljava/awt/Graphics;IIII)Z+157 j javax.swing.RepaintManager.paint(Ljavax/swing/JComponent;Ljavax/swing/JComponent;Ljava/awt/Graphics;IIII)V+52 j javax.swing.JComponent._paintImmediately(IIII)V+679 j javax.swing.JComponent.paintImmediately(IIII)V+83 j javax.swing.RepaintManager.paintDirtyRegions(Ljava/util/Map;)V+193 j javax.swing.RepaintManager.paintDirtyRegions()V+46 j javax.swing.RepaintManager.seqPaintDirtyRegions()V+73 j javax.swing.SystemEventQueueUtilities$ComponentWorkRequest.run()V+36 j java.awt.event.InvocationEvent.dispatch()V+47 j java.awt.EventQueue.dispatchEventImpl(Ljava/awt/AWTEvent;Ljava/lang/Object;)V+21 j java.awt.EventQueue.access$000(Ljava/awt/EventQueue;Ljava/awt/AWTEvent;Ljava/lang/Object;)V+3 j java.awt.EventQueue$1.run()Ljava/lang/Void;+12 j java.awt.EventQueue$1.run()Ljava/lang/Object;+1 v ~StubRoutines::call_stub j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0 j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object;+28 j java.awt.EventQueue.dispatchEvent(Ljava/awt/AWTEvent;)V+46 j java.awt.EventDispatchThread.pumpOneEventForFilters(I)Z+204 j java.awt.EventDispatchThread.pumpEventsForFilter(ILjava/awt/Conditional;Ljava/awt/EventFilter;)V+30 j java.awt.EventDispatchThread.pumpEventsForFilter(Ljava/awt/Conditional;Ljava/awt/EventFilter;)V+4 j java.awt.Dialog$1.run()V+23 j java.awt.Dialog$3.run()Ljava/lang/Object;+4 v ~StubRoutines::call_stub j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;)Ljava/lang/Object;+0 j java.awt.Dialog.show()V+223 j java.awt.Component.show(Z)V+5 j java.awt.Component.setVisible(Z)V+2 j java.awt.Window.setVisible(Z)V+2 j java.awt.Dialog.setVisible(Z)V+2 j org.cytoscape.work.internal.task.SwingTaskMonitor.showDialog(Z)V+39 j org.cytoscape.work.internal.task.SwingTaskMonitor$2.run()V+8 j java.awt.event.InvocationEvent.dispatch()V+47 j java.awt.EventQueue.dispatchEventImpl(Ljava/awt/AWTEvent;Ljava/lang/Object;)V+21 j java.awt.EventQueue.access$000(Ljava/awt/EventQueue;Ljava/awt/AWTEvent;Ljava/lang/Object;)V+3 j java.awt.EventQueue$1.run()Ljava/lang/Void;+12 j java.awt.EventQueue$1.run()Ljava/lang/Object;+1 v ~StubRoutines::call_stub j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0 j java.security.AccessControlContext$1.doIntersectionPrivilege(Ljava/security/PrivilegedAction;Ljava/security/AccessControlContext;Ljava/security/AccessControlContext;)Ljava/lang/Object;+28 j java.awt.EventQueue.dispatchEvent(Ljava/awt/AWTEvent;)V+46 j java.awt.EventDispatchThread.pumpOneEventForFilters(I)Z+204 j java.awt.EventDispatchThread.pumpEventsForFilter(ILjava/awt/Conditional;Ljava/awt/EventFilter;)V+30 j java.awt.EventDispatchThread.pumpEventsForHierarchy(ILjava/awt/Conditional;Ljava/awt/Component;)V+11 j java.awt.EventDispatchThread.pumpEvents(ILjava/awt/Conditional;)V+4 j java.awt.EventDispatchThread.pumpEvents(Ljava/awt/Conditional;)V+3 j java.awt.EventDispatchThread.run()V+9 v ~StubRoutines::call_stub --------------- P R O C E S S --------------- Java Threads: ( => current thread ) 0x00007fd51ce45800 JavaThread "Task Thread-SharedResourceRunner" daemon [_thread_blocked, id=15051, stack(0x00007fd50c98f000,0x00007fd50ca90000)] 0x00000000429a9800 JavaThread "Task Thread" [_thread_blocked, id=15049, stack(0x00007fd50b971000,0x00007fd50c372000)] 0x00007fd51c019800 JavaThread "Image Fetcher 0" daemon [_thread_blocked, id=15047, stack(0x00007fd50cfb2000,0x00007fd50d0b3000)] 0x00007fd51c8cb000 JavaThread "Thread-17" [_thread_blocked, id=15025, stack(0x00007fd50cb91000,0x00007fd50cc92000)] 0x0000000043fb5000 JavaThread "pool-16-thread-1" [_thread_in_native, id=15024, stack(0x00007fd50cc92000,0x00007fd50cd93000)] 0x00007fd51c755000 JavaThread "Thread-16" daemon [_thread_blocked, id=15023, stack(0x00007fd50e7df000,0x00007fd50e8e0000)] 0x00007fd51c6bc000 JavaThread "Thread-14" daemon [_thread_blocked, id=15021, stack(0x00007fd50e8e0000,0x00007fd50e9e1000)] 0x00007fd51e22b800 JavaThread "TimerQueue" daemon [_thread_blocked, id=15020, stack(0x00007fd50e9e1000,0x00007fd50eae2000)] 0x0000000043ea1000 JavaThread "Task Thread" daemon [_thread_blocked, id=15015, stack(0x00007fd50d0b3000,0x00007fd50dab4000)] 0x0000000042d1c000 JavaThread "Task Thread" daemon [_thread_blocked, id=15014, stack(0x00007fd50dab4000,0x00007fd50e4b5000)] 0x00007fd51cb0f000 JavaThread "pool-10-thread-1" [_thread_blocked, id=15013, stack(0x00007fd50eaf4000,0x00007fd50ebf5000)] =>0x0000000043ed1000 JavaThread "AWT-EventQueue-0" [_thread_in_native, id=15011, stack(0x00007fd50ebf5000,0x00007fd50ecf6000)] 0x00000000430ec800 JavaThread "AWT-Shutdown" [_thread_blocked, id=15010, stack(0x00007fd50ecf6000,0x00007fd50edf7000)] 0x0000000042c67800 JavaThread "AWT-XAWT" daemon [_thread_in_native, id=15009, stack(0x00007fd50f8e3000,0x00007fd50f9e4000)] 0x0000000042cb0800 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=15008, stack(0x00007fd5148dc000,0x00007fd5149dd000)] 0x0000000043e11000 JavaThread "NioSocketAcceptor-1" [_thread_in_native, id=15005, stack(0x00007fd50f9e4000,0x00007fd50fae5000)] 0x0000000043062000 JavaThread "Timer-0" daemon [_thread_blocked, id=15004, stack(0x00007fd50fafb000,0x00007fd50fbfc000)] 0x00007fd5101e4000 JavaThread "JMX OSGi Bundle State Event Dispatcher" daemon [_thread_blocked, id=15002, stack(0x00007fd50fbfc000,0x00007fd50fcfd000)] 0x0000000042fb5800 JavaThread "RMI TCP Connection(idle)" daemon [_thread_blocked, id=15000, stack(0x00007fd50fcfd000,0x00007fd50fdfe000)] 0x0000000042fb3800 JavaThread "RMI RenewClean-[127.0.1.1:44444]" daemon [_thread_blocked, id=14999, stack(0x00007fd50fdfe000,0x00007fd50feff000)] 0x00000000430ca800 JavaThread "RMI Scheduler(0)" daemon [_thread_blocked, id=14998, stack(0x00007fd5140d4000,0x00007fd5141d5000)] 0x00000000430c8000 JavaThread "RMI TCP Connection(idle)" daemon [_thread_blocked, id=14997, stack(0x00007fd5141d5000,0x00007fd5142d6000)] 0x0000000042fad800 JavaThread "JMX OSGi Blueprint State Event Dispatcher" daemon [_thread_blocked, id=14996, stack(0x00007fd5142d6000,0x00007fd5143d7000)] 0x0000000042d97000 JavaThread "GC Daemon" daemon [_thread_blocked, id=14995, stack(0x00007fd5143d7000,0x00007fd5144d8000)] 0x0000000042d94800 JavaThread "RMI Reaper" [_thread_blocked, id=14994, stack(0x00007fd5144d8000,0x00007fd5145d9000)] 0x0000000042d8d800 JavaThread "RMI TCP Accept-44444" daemon [_thread_in_native, id=14993, stack(0x00007fd5145d9000,0x00007fd5146da000)] 0x00007fd510780800 JavaThread "Blueprint Event Dispatcher: 1" daemon [_thread_blocked, id=14991, stack(0x00007fd5146da000,0x00007fd5147db000)] 0x00007fd51053a000 JavaThread "JMX OSGi Service State Event Dispatcher" daemon [_thread_blocked, id=14990, stack(0x00007fd5147db000,0x00007fd5148dc000)] 0x0000000043075800 JavaThread "RMI TCP Accept-1099" daemon [_thread_in_native, id=14988, stack(0x00007fd5149dd000,0x00007fd514ade000)] 0x0000000042c52800 JavaThread "gogo shell pipe thread" daemon [_thread_in_native, id=14987, stack(0x00007fd514ae0000,0x00007fd514be1000)] 0x0000000042df6000 JavaThread "Karaf Shell Console Thread" daemon [_thread_blocked, id=14986, stack(0x00007fd514be1000,0x00007fd514ce2000)] 0x00007fd51029e800 JavaThread "NonBlockingInputStreamThread" daemon [_thread_blocked, id=14985, stack(0x00007fd514ce2000,0x00007fd514de3000)] 0x00007fd51c5ec800 JavaThread "JMX OSGi Agent" daemon [_thread_blocked, id=14972, stack(0x00007fd514fef000,0x00007fd5150f0000)] 0x0000000042c09000 JavaThread "Blueprint Extender: 3" daemon [_thread_blocked, id=14969, stack(0x00007fd5150f0000,0x00007fd5151f1000)] 0x0000000042c08800 JavaThread "Blueprint Extender: 2" daemon [_thread_blocked, id=14968, stack(0x00007fd5151f1000,0x00007fd5152f2000)] 0x0000000042c24800 JavaThread "Blueprint Extender: 1" daemon [_thread_blocked, id=14967, stack(0x00007fd5152f2000,0x00007fd5153f3000)] 0x0000000042c26800 JavaThread "fileinstall-/home/ol/CytoscapeConfiguration/3/apps/installed" daemon [_thread_blocked, id=14966, stack(0x00007fd5153fb000,0x00007fd5154fc000)] 0x00007fd51c3bd800 JavaThread "fileinstall-/home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/etc" daemon [_thread_blocked, id=14965, stack(0x00007fd5154fc000,0x00007fd5155fd000)] 0x00007fd51c3ae000 JavaThread "CM Event Dispatcher" daemon [_thread_blocked, id=14964, stack(0x00007fd5155fd000,0x00007fd5156fe000)] 0x00007fd51c3ad000 JavaThread "CM Configuration Updater" daemon [_thread_blocked, id=14963, stack(0x00007fd5156fe000,0x00007fd5157ff000)] 0x0000000042aba000 JavaThread "Thread-2" daemon [_thread_in_native, id=14962, stack(0x00007fd5157ff000,0x00007fd515900000)] 0x00007fd51c39b000 JavaThread "Thread-1" [_thread_blocked, id=14961, stack(0x00007fd515904000,0x00007fd515a05000)] 0x00007fd51c1be800 JavaThread "FelixPackageAdmin" daemon [_thread_blocked, id=14960, stack(0x00007fd515a26000,0x00007fd515b27000)] 0x00007fd51c141000 JavaThread "FelixStartLevel" daemon [_thread_blocked, id=14959, stack(0x00007fd515b27000,0x00007fd515c28000)] 0x00007fd51c1ff000 JavaThread "FelixDispatchQueue" [_thread_blocked, id=14958, stack(0x00007fd515c28000,0x00007fd515d29000)] 0x0000000042a66000 JavaThread "RMI TCP Accept-0" daemon [_thread_in_native, id=14956, stack(0x00007fd515f32000,0x00007fd516033000)] 0x00007fd51c026000 JavaThread "Low Memory Detector" daemon [_thread_blocked, id=14955, stack(0x00007fd516251000,0x00007fd516352000)] 0x00007fd51c022800 JavaThread "C2 CompilerThread1" daemon [_thread_blocked, id=14954, stack(0x00007fd516352000,0x00007fd516453000)] 0x00000000428f1000 JavaThread "C2 CompilerThread0" daemon [_thread_blocked, id=14953, stack(0x00007fd516453000,0x00007fd516554000)] 0x00000000428ef000 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=14952, stack(0x00007fd516554000,0x00007fd516655000)] 0x00000000428d3000 JavaThread "Finalizer" daemon [_thread_blocked, id=14951, stack(0x00007fd516655000,0x00007fd516756000)] 0x00000000428cb800 JavaThread "Reference Handler" daemon [_thread_blocked, id=14950, stack(0x00007fd516756000,0x00007fd516857000)] 0x0000000041f04800 JavaThread "main" [_thread_blocked, id=14940, stack(0x00007fd5211d9000,0x00007fd5212da000)] Other Threads: 0x00000000428c5000 VMThread [stack: 0x00007fd516857000,0x00007fd516958000] [id=14949] 0x0000000042a77000 WatcherThread [stack: 0x00007fd515e31000,0x00007fd515f32000] [id=14957] VM state:not at safepoint (normal execution) VM Mutex/Monitor currently owned by a thread: None Heap PSYoungGen total 262784K, used 46830K [0x00000007998b0000, 0x00000007b09d0000, 0x0000000800000000) eden space 245888K, 12% used [0x00000007998b0000,0x000000079b5ed390,0x00000007a88d0000) from space 16896K, 99% used [0x00000007a88d0000,0x00000007a994e788,0x00000007a9950000) to space 26816K, 0% used [0x00000007aefa0000,0x00000007aefa0000,0x00000007b09d0000) PSOldGen total 87424K, used 37517K [0x00000006cca00000, 0x00000006d1f60000, 0x00000007998b0000) object space 87424K, 42% used [0x00000006cca00000,0x00000006ceea3468,0x00000006d1f60000) PSPermGen total 62528K, used 62510K [0x00000006c7800000, 0x00000006cb510000, 0x00000006cca00000) object space 62528K, 99% used [0x00000006c7800000,0x00000006cb50b998,0x00000006cb510000) Code Cache [0x00007fd518585000, 0x00007fd518985000, 0x00007fd51b585000) total_blobs=1875 nmethods=950 adapters=878 free_code_cache=46186560 largest_free_block=448 Dynamic libraries: 40000000-40009000 r-xp 00000000 08:11 7089646 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/bin/java 40009000-4000b000 r-xs 00000000 08:11 4067594 /tmp/glVJimET (deleted) 40108000-4010a000 rwxp 00008000 08:11 7089646 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/bin/java 41580000-41676000 rwxp 00000000 00:00 0 41b6e000-41be9000 rwxp 00000000 00:00 0 41ee6000-44310000 rwxp 00000000 00:00 0 [heap] 6c7800000-6cb510000 rwxp 00000000 00:00 0 6cb510000-6cca00000 rwxp 00000000 00:00 0 6cca00000-6d1f60000 rwxp 00000000 00:00 0 6d1f60000-7998b0000 rwxp 00000000 00:00 0 7998b0000-7b09d0000 rwxp 00000000 00:00 0 7b09d0000-800000000 rwxp 00000000 00:00 0 7fd507811000-7fd507911000 rwxs 2418a000 00:05 5054 /dev/nvidia0 7fd507911000-7fd507a11000 rwxs 24267000 00:05 5054 /dev/nvidia0 7fd507a11000-7fd507a15000 rwxs 2425f000 00:05 5054 /dev/nvidia0 7fd507a15000-7fd507a35000 rwxs d80c0000 00:05 5054 /dev/nvidia0 7fd507a35000-7fd507a75000 rwxs 2421e000 00:05 5054 /dev/nvidia0 7fd507a75000-7fd507a95000 rwxs 241fc000 00:05 5054 /dev/nvidia0 7fd507a95000-7fd507a96000 rwxs dfeea000 00:05 5054 /dev/nvidia0 7fd507a96000-7fd507ad6000 rwxs 241bb000 00:05 5054 /dev/nvidia0 7fd507ad6000-7fd507af6000 rwxs 264ce000 00:05 5054 /dev/nvidia0 7fd507af6000-7fd507b36000 rwxs 24146000 00:05 5054 /dev/nvidia0 7fd507b36000-7fd507b56000 rwxs 2411b000 00:05 5054 /dev/nvidia0 7fd507b56000-7fd507b59000 ---p 00000000 00:00 0 7fd507b59000-7fd507c57000 rwxp 00000000 00:00 0 7fd507c57000-7fd507c5a000 ---p 00000000 00:00 0 7fd507c5a000-7fd507d58000 rwxp 00000000 00:00 0 7fd507d58000-7fd507f58000 rwxs 266d5000 00:05 5054 /dev/nvidia0 7fd507f58000-7fd508158000 rwxs 37b1f000 00:05 5054 /dev/nvidia0 7fd508158000-7fd508358000 rwxs c8018000 00:05 5054 /dev/nvidia0 7fd508358000-7fd508458000 rwxs 37868000 00:05 5054 /dev/nvidia0 7fd508458000-7fd50845c000 rwxs 3791e000 00:05 5054 /dev/nvidia0 7fd50845c000-7fd50847c000 rwxs d8080000 00:05 5054 /dev/nvidia0 7fd50847c000-7fd5084bc000 rwxs c80bf000 00:05 5054 /dev/nvidia0 7fd5084bc000-7fd5084dc000 rwxs c80af000 00:05 5054 /dev/nvidia0 7fd5084dc000-7fd5084dd000 rwxs dfee7000 00:05 5054 /dev/nvidia0 7fd5084dd000-7fd50851d000 rwxs 379c4000 00:05 5054 /dev/nvidia0 7fd50851d000-7fd50853d000 rwxs 37a72000 00:05 5054 /dev/nvidia0 7fd50853d000-7fd50857d000 rwxs 37a7e000 00:05 5054 /dev/nvidia0 7fd50857d000-7fd50857f000 r-xp 00000000 08:11 7082632 /usr/lib/libXinerama.so.1.0.0 7fd50857f000-7fd50877e000 ---p 00002000 08:11 7082632 /usr/lib/libXinerama.so.1.0.0 7fd50877e000-7fd50877f000 rwxp 00001000 08:11 7082632 /usr/lib/libXinerama.so.1.0.0 7fd50877f000-7fd50880b000 r-xp 00000000 08:11 539813 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libjogl_desktop.so 7fd50880b000-7fd508a0a000 ---p 0008c000 08:11 539813 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libjogl_desktop.so 7fd508a0a000-7fd508a0b000 r-xp 0008b000 08:11 539813 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libjogl_desktop.so 7fd508a0b000-7fd508a0c000 rwxp 0008c000 08:11 539813 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libjogl_desktop.so 7fd508a0c000-7fd50a34b000 r-xp 00000000 08:11 7088815 /usr/lib/libnvidia-glcore.so.295.59 7fd50a34b000-7fd50a54a000 ---p 0193f000 08:11 7088815 /usr/lib/libnvidia-glcore.so.295.59 7fd50a54a000-7fd50ad2c000 rwxp 0193e000 08:11 7088815 /usr/lib/libnvidia-glcore.so.295.59 7fd50ad2c000-7fd50ad46000 rwxp 00000000 00:00 0 7fd50ad46000-7fd50ad49000 r-xp 00000000 08:11 7088820 /usr/lib/tls/libnvidia-tls.so.295.59 7fd50ad49000-7fd50af48000 ---p 00003000 08:11 7088820 /usr/lib/tls/libnvidia-tls.so.295.59 7fd50af48000-7fd50af49000 rwxp 00002000 08:11 7088820 /usr/lib/tls/libnvidia-tls.so.295.59 7fd50af49000-7fd50b010000 r-xp 00000000 08:11 7088818 /usr/lib/nvidia/current/libGL.so.295.59 7fd50b010000-7fd50b20f000 ---p 000c7000 08:11 7088818 /usr/lib/nvidia/current/libGL.so.295.59 7fd50b20f000-7fd50b24b000 rwxp 000c6000 08:11 7088818 /usr/lib/nvidia/current/libGL.so.295.59 7fd50b24b000-7fd50b261000 rwxp 00000000 00:00 0 7fd50b261000-7fd50b266000 r-xp 00000000 08:11 7082658 /usr/lib/libXxf86vm.so.1.0.0 7fd50b266000-7fd50b465000 ---p 00005000 08:11 7082658 /usr/lib/libXxf86vm.so.1.0.0 7fd50b465000-7fd50b466000 rwxp 00004000 08:11 7082658 /usr/lib/libXxf86vm.so.1.0.0 7fd50b466000-7fd50b46c000 r-xp 00000000 08:11 539812 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libnativewindow_x11.so 7fd50b46c000-7fd50b66b000 ---p 00006000 08:11 539812 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libnativewindow_x11.so 7fd50b66b000-7fd50b66c000 r-xp 00005000 08:11 539812 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libnativewindow_x11.so 7fd50b66c000-7fd50b66d000 rwxp 00006000 08:11 539812 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libnativewindow_x11.so 7fd50b66d000-7fd50b66f000 r-xp 00000000 08:11 539811 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libnativewindow_awt.so 7fd50b66f000-7fd50b86e000 ---p 00002000 08:11 539811 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libnativewindow_awt.so 7fd50b86e000-7fd50b86f000 r-xp 00001000 08:11 539811 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libnativewindow_awt.so 7fd50b86f000-7fd50b870000 rwxp 00002000 08:11 539811 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libnativewindow_awt.so 7fd50b870000-7fd50b871000 r-xp 00000000 08:11 7089450 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libjawt.so 7fd50b871000-7fd50b970000 ---p 00001000 08:11 7089450 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libjawt.so 7fd50b970000-7fd50b971000 rwxp 00000000 08:11 7089450 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libjawt.so 7fd50b971000-7fd50b974000 ---p 00000000 00:00 0 7fd50b974000-7fd50c372000 rwxp 00000000 00:00 0 7fd50c372000-7fd50c787000 rwxs 00000000 00:04 6324239 /SYSV00000000 (deleted) 7fd50c78c000-7fd50c78e000 r-xp 00000000 08:11 539809 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libgluegen-rt.so 7fd50c78e000-7fd50c98d000 ---p 00002000 08:11 539809 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libgluegen-rt.so 7fd50c98d000-7fd50c98e000 r-xp 00001000 08:11 539809 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libgluegen-rt.so 7fd50c98e000-7fd50c98f000 rwxp 00002000 08:11 539809 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle87/version0.0/bundle.jar-lib/0/lib/linux-amd64/libgluegen-rt.so 7fd50c98f000-7fd50c992000 ---p 00000000 00:00 0 7fd50c992000-7fd50ca90000 rwxp 00000000 00:00 0 7fd50ca90000-7fd50ca93000 ---p 00000000 00:00 0 7fd50ca93000-7fd50cb91000 rwxp 00000000 00:00 0 7fd50cb91000-7fd50cb94000 ---p 00000000 00:00 0 7fd50cb94000-7fd50cc92000 rwxp 00000000 00:00 0 7fd50cc92000-7fd50cc95000 ---p 00000000 00:00 0 7fd50cc95000-7fd50cd93000 rwxp 00000000 00:00 0 7fd50cd93000-7fd50cfb2000 r-xs 00c09000 08:11 671436 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle157/version0.0/bundle.jar-embedded/ooxml-schemas-1.1.jar 7fd50cfb2000-7fd50cfb5000 ---p 00000000 00:00 0 7fd50cfb5000-7fd50d0b3000 rwxp 00000000 00:00 0 7fd50d0b3000-7fd50d0b6000 ---p 00000000 00:00 0 7fd50d0b6000-7fd50dab4000 rwxp 00000000 00:00 0 7fd50dab4000-7fd50dab7000 ---p 00000000 00:00 0 7fd50dab7000-7fd50e4b5000 rwxp 00000000 00:00 0 7fd50e4b5000-7fd50e4b6000 r-xs 00000000 08:11 2365520 /var/cache/fontconfig/c05880de57d1f5e948fdfacc138775d9-le64.cache-3 7fd50e4b6000-7fd50e4bf000 r-xs 00000000 08:11 2359329 /var/cache/fontconfig/945677eb7aeaf62f1d50efc3fb3ec7d8-le64.cache-3 7fd50e4bf000-7fd50e4c2000 r-xs 00000000 08:11 2364096 /var/cache/fontconfig/99e8ed0e538f840c565b6ed5dad60d56-le64.cache-3 7fd50e4c2000-7fd50e4c3000 r-xs 00000000 08:11 2365251 /var/cache/fontconfig/0fafd173547752dce4dee1a69e0b3c95-le64.cache-3 7fd50e4c3000-7fd50e4cb000 r-xs 00000000 08:11 2365517 /var/cache/fontconfig/e383d7ea5fbe662a33d9b44caf393297-le64.cache-3 7fd50e4cb000-7fd50e4ce000 r-xs 00000000 08:11 2365488 /var/cache/fontconfig/ea47318ec9849e1a71e80a5d69d13859-le64.cache-3 7fd50e4ce000-7fd50e4d0000 r-xs 00000000 08:11 2365450 /var/cache/fontconfig/e3fa16a14183b06aa45b3e009278fd14-le64.cache-3 7fd50e4d0000-7fd50e4d3000 r-xs 00000000 08:11 2365447 /var/cache/fontconfig/b5ea634b0fb353b8ea17632d1f9ef766-le64.cache-3 7fd50e4d3000-7fd50e4d7000 r-xs 00000000 08:11 2365429 /var/cache/fontconfig/6eb3985aa4124903f6ff08ba781cd364-le64.cache-3 7fd50e4d7000-7fd50e4e0000 r-xs 00000000 08:11 2365203 /var/cache/fontconfig/6d41288fd70b0be22e8c3a91e032eec0-le64.cache-3 7fd50e4e0000-7fd50e4e6000 r-xs 00000000 08:11 2365217 /var/cache/fontconfig/d60319d88cac85ba9e1a07bd06cfbb8c-le64.cache-3 7fd50e4e6000-7fd50e4e9000 r-xs 00000000 08:11 2365428 /var/cache/fontconfig/ddd4086aec35a5275babba44bb759c3c-le64.cache-3 7fd50e4e9000-7fd50e4ea000 r-xs 00000000 08:11 2365381 /var/cache/fontconfig/4794a0821666d79190d59a36cb4f44b5-le64.cache-3 7fd50e4ea000-7fd50e4f4000 r-xs 00000000 08:11 2365244 /var/cache/fontconfig/d52a8644073d54c13679302ca1180695-le64.cache-3 7fd50e4f4000-7fd50e4fb000 r-xs 00000000 08:11 2365250 /var/cache/fontconfig/089dead882dea3570ffc31a9898cfb69-le64.cache-3 7fd50e516000-7fd50e536000 rwxs 19534000 00:05 5054 /dev/nvidia0 7fd50e536000-7fd50e553000 rwxs 1a9c4d000 00:05 5054 /dev/nvidia0 7fd50e553000-7fd50e5e5000 r-xs 003ec000 08:11 671435 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle157/version0.0/bundle.jar-embedded/poi-ooxml-schemas-3.8.jar 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/var/cache/fontconfig/945677eb7aeaf62f1d50efc3fb3ec7d8-le64.cache-3 7fd50e633000-7fd50e636000 r-xs 00000000 08:11 2364096 /var/cache/fontconfig/99e8ed0e538f840c565b6ed5dad60d56-le64.cache-3 7fd50e636000-7fd50e637000 r-xs 00000000 08:11 2365251 /var/cache/fontconfig/0fafd173547752dce4dee1a69e0b3c95-le64.cache-3 7fd50e637000-7fd50e63f000 r-xs 00000000 08:11 2365517 /var/cache/fontconfig/e383d7ea5fbe662a33d9b44caf393297-le64.cache-3 7fd50e63f000-7fd50e642000 r-xs 00000000 08:11 2365488 /var/cache/fontconfig/ea47318ec9849e1a71e80a5d69d13859-le64.cache-3 7fd50e642000-7fd50e644000 r-xs 00000000 08:11 2365450 /var/cache/fontconfig/e3fa16a14183b06aa45b3e009278fd14-le64.cache-3 7fd50e644000-7fd50e647000 r-xs 00000000 08:11 2365447 /var/cache/fontconfig/b5ea634b0fb353b8ea17632d1f9ef766-le64.cache-3 7fd50e647000-7fd50e64b000 r-xs 00000000 08:11 2365429 /var/cache/fontconfig/6eb3985aa4124903f6ff08ba781cd364-le64.cache-3 7fd50e64b000-7fd50e654000 r-xs 00000000 08:11 2365203 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7fd51b8a6000-7fd51b8b0000 r-xp 00000000 08:11 6032651 /lib/libnss_nis-2.11.3.so 7fd51b8b0000-7fd51baaf000 ---p 0000a000 08:11 6032651 /lib/libnss_nis-2.11.3.so 7fd51baaf000-7fd51bab0000 r-xp 00009000 08:11 6032651 /lib/libnss_nis-2.11.3.so 7fd51bab0000-7fd51bab1000 rwxp 0000a000 08:11 6032651 /lib/libnss_nis-2.11.3.so 7fd51bab1000-7fd51bab8000 r-xp 00000000 08:11 6032636 /lib/libnss_compat-2.11.3.so 7fd51bab8000-7fd51bcb7000 ---p 00007000 08:11 6032636 /lib/libnss_compat-2.11.3.so 7fd51bcb7000-7fd51bcb8000 r-xp 00006000 08:11 6032636 /lib/libnss_compat-2.11.3.so 7fd51bcb8000-7fd51bcb9000 rwxp 00007000 08:11 6032636 /lib/libnss_compat-2.11.3.so 7fd51bcb9000-7fd51bcce000 r-xp 00000000 08:11 6032641 /lib/libnsl-2.11.3.so 7fd51bcce000-7fd51becd000 ---p 00015000 08:11 6032641 /lib/libnsl-2.11.3.so 7fd51becd000-7fd51bece000 r-xp 00014000 08:11 6032641 /lib/libnsl-2.11.3.so 7fd51bece000-7fd51becf000 rwxp 00015000 08:11 6032641 /lib/libnsl-2.11.3.so 7fd51becf000-7fd51bed1000 rwxp 00000000 00:00 0 7fd51bed1000-7fd51befa000 r-xp 00000000 08:11 7089408 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libjava.so 7fd51befa000-7fd51bff9000 ---p 00029000 08:11 7089408 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libjava.so 7fd51bff9000-7fd51c000000 rwxp 00028000 08:11 7089408 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libjava.so 7fd51c000000-7fd51ea35000 rwxp 00000000 00:00 0 7fd51ea35000-7fd520000000 ---p 00000000 00:00 0 7fd520000000-7fd520002000 r-xs 00007000 08:11 3936507 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle11/version0.0/bundle.jar 7fd520002000-7fd520004000 r-xs 0000a000 08:11 3936462 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle10/version0.0/bundle.jar 7fd520004000-7fd52000d000 r-xs 00054000 08:11 3936452 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle9/version0.0/bundle.jar 7fd52000d000-7fd520012000 r-xs 00035000 08:11 3678288 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle8/version0.0/bundle.jar 7fd520012000-7fd520014000 r-xs 00009000 08:11 3678279 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle7/version0.0/bundle.jar 7fd520014000-7fd520017000 r-xs 00014000 08:11 3678270 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle6/version0.0/bundle.jar 7fd520017000-7fd52001a000 r-xs 00015000 08:11 3678261 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle5/version0.0/bundle.jar 7fd52001a000-7fd520027000 r-xp 00000000 08:11 7089421 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libverify.so 7fd520027000-7fd520126000 ---p 0000d000 08:11 7089421 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libverify.so 7fd520126000-7fd520129000 rwxp 0000c000 08:11 7089421 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libverify.so 7fd520129000-7fd52012e000 r-xp 00000000 08:11 7082624 /usr/lib/libXfixes.so.3.1.0 7fd52012e000-7fd52032d000 ---p 00005000 08:11 7082624 /usr/lib/libXfixes.so.3.1.0 7fd52032d000-7fd52032e000 rwxp 00004000 08:11 7082624 /usr/lib/libXfixes.so.3.1.0 7fd52032e000-7fd520337000 r-xp 00000000 08:11 7082642 /usr/lib/libXrender.so.1.3.0 7fd520337000-7fd520537000 ---p 00009000 08:11 7082642 /usr/lib/libXrender.so.1.3.0 7fd520537000-7fd520538000 rwxp 00009000 08:11 7082642 /usr/lib/libXrender.so.1.3.0 7fd520538000-7fd520541000 r-xp 00000000 08:11 7082616 /usr/lib/libXcursor.so.1.0.2 7fd520541000-7fd520741000 ---p 00009000 08:11 7082616 /usr/lib/libXcursor.so.1.0.2 7fd520741000-7fd520742000 rwxp 00009000 08:11 7082616 /usr/lib/libXcursor.so.1.0.2 7fd520742000-7fd5208b7000 r-xp 00000000 08:11 7080281 /usr/lib/locale/locale-archive 7fd5208b7000-7fd5208b8000 ---p 00000000 00:00 0 7fd5208b8000-7fd5210b8000 rwxp 00000000 00:00 0 7fd5210b8000-7fd5210b9000 rwxs 240d8000 00:05 5054 /dev/nvidia0 7fd5210b9000-7fd5210bb000 rwxp 00000000 00:00 0 7fd5210bb000-7fd5210bd000 rwxs 00000000 08:11 4067594 /tmp/glVJimET (deleted) 7fd5210bd000-7fd5210be000 rwxs c82ae000 00:05 5054 /dev/nvidia0 7fd5210be000-7fd5210c2000 rwxs 0e621000 00:05 5054 /dev/nvidia0 7fd5210c2000-7fd5210c3000 rwxs dfee8000 00:05 5054 /dev/nvidia0 7fd5210c3000-7fd5210c4000 rwxs dfee6000 00:05 5054 /dev/nvidia0 7fd5210c4000-7fd5210c5000 rwxs f8641000 00:05 5054 /dev/nvidia0 7fd5210c5000-7fd5210c6000 rwxs 1a9cb0000 00:05 5054 /dev/nvidia0 7fd5210c6000-7fd5210c7000 rwxs c82c4000 00:05 5054 /dev/nvidia0 7fd5210c7000-7fd5210c8000 rwxs f8060000 00:05 5054 /dev/nvidia0 7fd5210c8000-7fd5210cb000 ---p 00000000 00:00 0 7fd5210cb000-7fd5211c9000 rwxp 00000000 00:00 0 7fd5211c9000-7fd5211cb000 r-xs 00007000 08:11 3936557 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle12/version0.0/bundle.jar 7fd5211cb000-7fd5211d5000 r-xs 0007d000 08:11 3678243 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle3/version0.0/bundle.jar 7fd5211d5000-7fd5211d9000 r-xs 00018000 08:11 3678059 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle2/version0.0/bundle.jar 7fd5211d9000-7fd5211dc000 ---p 00000000 00:00 0 7fd5211dc000-7fd5212da000 rwxp 00000000 00:00 0 7fd5212da000-7fd5212df000 r-xp 00000000 08:11 7082620 /usr/lib/libXdmcp.so.6.0.0 7fd5212df000-7fd5214de000 ---p 00005000 08:11 7082620 /usr/lib/libXdmcp.so.6.0.0 7fd5214de000-7fd5214df000 rwxp 00004000 08:11 7082620 /usr/lib/libXdmcp.so.6.0.0 7fd5214df000-7fd5214e1000 r-xp 00000000 08:11 7082609 /usr/lib/libXau.so.6.0.0 7fd5214e1000-7fd5216e1000 ---p 00002000 08:11 7082609 /usr/lib/libXau.so.6.0.0 7fd5216e1000-7fd5216e2000 rwxp 00002000 08:11 7082609 /usr/lib/libXau.so.6.0.0 7fd5216e2000-7fd5216fe000 r-xp 00000000 08:11 7084043 /usr/lib/libxcb.so.1.1.0 7fd5216fe000-7fd5218fd000 ---p 0001c000 08:11 7084043 /usr/lib/libxcb.so.1.1.0 7fd5218fd000-7fd5218fe000 rwxp 0001b000 08:11 7084043 /usr/lib/libxcb.so.1.1.0 7fd5218fe000-7fd52190f000 r-xp 00000000 08:11 7082622 /usr/lib/libXext.so.6.4.0 7fd52190f000-7fd521b0f000 ---p 00011000 08:11 7082622 /usr/lib/libXext.so.6.4.0 7fd521b0f000-7fd521b10000 rwxp 00011000 08:11 7082622 /usr/lib/libXext.so.6.4.0 7fd521b10000-7fd521c45000 r-xp 00000000 08:11 7082605 /usr/lib/libX11.so.6.3.0 7fd521c45000-7fd521e45000 ---p 00135000 08:11 7082605 /usr/lib/libX11.so.6.3.0 7fd521e45000-7fd521e4b000 rwxp 00135000 08:11 7082605 /usr/lib/libX11.so.6.3.0 7fd521e4b000-7fd521e80000 r-xp 00000000 08:11 7089438 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libsplashscreen.so 7fd521e80000-7fd521f7f000 ---p 00035000 08:11 7089438 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libsplashscreen.so 7fd521f7f000-7fd521f8a000 rwxp 00034000 08:11 7089438 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/libsplashscreen.so 7fd521f8a000-7fd521f8d000 rwxp 00000000 00:00 0 7fd521f8d000-7fd52200d000 r-xp 00000000 08:11 6032650 /lib/libm-2.11.3.so 7fd52200d000-7fd52220d000 ---p 00080000 08:11 6032650 /lib/libm-2.11.3.so 7fd52220d000-7fd52220e000 r-xp 00080000 08:11 6032650 /lib/libm-2.11.3.so 7fd52220e000-7fd52220f000 rwxp 00081000 08:11 6032650 /lib/libm-2.11.3.so 7fd52220f000-7fd522b29000 r-xp 00000000 08:11 7089419 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/server/libjvm.so 7fd522b29000-7fd522c2b000 ---p 0091a000 08:11 7089419 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/server/libjvm.so 7fd522c2b000-7fd522de0000 rwxp 0091c000 08:11 7089419 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/server/libjvm.so 7fd522de0000-7fd522e1a000 rwxp 00000000 00:00 0 7fd522e1a000-7fd522f73000 r-xp 00000000 08:11 6032637 /lib/libc-2.11.3.so 7fd522f73000-7fd523172000 ---p 00159000 08:11 6032637 /lib/libc-2.11.3.so 7fd523172000-7fd523176000 r-xp 00158000 08:11 6032637 /lib/libc-2.11.3.so 7fd523176000-7fd523177000 rwxp 0015c000 08:11 6032637 /lib/libc-2.11.3.so 7fd523177000-7fd52317c000 rwxp 00000000 00:00 0 7fd52317c000-7fd52317e000 r-xp 00000000 08:11 6032649 /lib/libdl-2.11.3.so 7fd52317e000-7fd52337e000 ---p 00002000 08:11 6032649 /lib/libdl-2.11.3.so 7fd52337e000-7fd52337f000 r-xp 00002000 08:11 6032649 /lib/libdl-2.11.3.so 7fd52337f000-7fd523380000 rwxp 00003000 08:11 6032649 /lib/libdl-2.11.3.so 7fd523380000-7fd523397000 r-xp 00000000 08:11 6032632 /lib/libpthread-2.11.3.so 7fd523397000-7fd523596000 ---p 00017000 08:11 6032632 /lib/libpthread-2.11.3.so 7fd523596000-7fd523597000 r-xp 00016000 08:11 6032632 /lib/libpthread-2.11.3.so 7fd523597000-7fd523598000 rwxp 00017000 08:11 6032632 /lib/libpthread-2.11.3.so 7fd523598000-7fd52359c000 rwxp 00000000 00:00 0 7fd52359c000-7fd5235ba000 r-xp 00000000 08:11 6032633 /lib/ld-2.11.3.so 7fd5235ba000-7fd5235bd000 r-xs 00015000 08:11 3678252 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle4/version0.0/bundle.jar 7fd5235bd000-7fd5235c2000 r-xs 0004e000 08:11 3678042 /home/ol/CytoscapeConfiguration/3/karaf_data/cache/bundle1/version0.0/bundle.jar 7fd5235c2000-7fd5235c9000 r-xs 00094000 08:11 7088890 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/jsse.jar 7fd5235c9000-7fd5235ca000 r-xs 00000000 08:11 4067155 /home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/lib/branding-3.1.0-SNAPSHOT.jar 7fd5235ca000-7fd5235d0000 r-xs 0005d000 08:11 6554781 /home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/system/org/apache/felix/org.apache.felix.framework/3.2.2/org.apache.felix.framework-3.2.2.jar 7fd5235d0000-7fd5235d4000 r-xs 00023000 08:11 4067151 /home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/lib/karaf.jar 7fd5235d4000-7fd5235d6000 r-xs 00001000 08:11 4328322 /home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/lib/endorsed/org.apache.karaf.exception-2.2.9.jar 7fd5235d6000-7fd5235e6000 rwxp 00000000 00:00 0 7fd5235e6000-7fd523696000 rwxp 00000000 00:00 0 7fd523696000-7fd523699000 rwxp 00000000 00:00 0 7fd523699000-7fd5236a0000 r-xp 00000000 08:11 7089434 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/jli/libjli.so 7fd5236a0000-7fd5237a1000 ---p 00007000 08:11 7089434 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/jli/libjli.so 7fd5237a1000-7fd5237a3000 rwxp 00008000 08:11 7089434 /usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/jli/libjli.so 7fd5237a3000-7fd5237a4000 rwxp 00000000 00:00 0 7fd5237a4000-7fd5237a5000 r-xs 00001000 08:11 4067156 /home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/lib/karaf-launcher-3.1.0-SNAPSHOT.jar 7fd5237a5000-7fd5237a6000 r-xs 00002000 08:11 4067154 /home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/lib/karaf-jaas-boot.jar 7fd5237a6000-7fd5237ae000 rwxs 00000000 08:11 4067295 /tmp/hsperfdata_ol/14913 7fd5237ae000-7fd5237af000 rwxp 00000000 00:00 0 7fd5237af000-7fd5237b0000 r-xp 00000000 00:00 0 7fd5237b0000-7fd5237b7000 r-xs 00000000 08:11 7086347 /usr/lib/gconv/gconv-modules.cache 7fd5237b7000-7fd5237b9000 rwxp 00000000 00:00 0 7fd5237b9000-7fd5237ba000 r-xp 0001d000 08:11 6032633 /lib/ld-2.11.3.so 7fd5237ba000-7fd5237bb000 rwxp 0001e000 08:11 6032633 /lib/ld-2.11.3.so 7fd5237bb000-7fd5237bc000 rwxp 00000000 00:00 0 7fff9b550000-7fff9b566000 rwxp 00000000 00:00 0 [stack] 7fff9b5ff000-7fff9b600000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall] VM Arguments: jvm_args: -Xmx4918M -Djava.endorsed.dirs=/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/endorsed:/usr/lib/jvm/java-6-sun-1.6.0.26/lib/endorsed:/home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/lib/endorsed -Djava.ext.dirs=/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/ext:/usr/lib/jvm/java-6-sun-1.6.0.26/lib/ext:/home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/lib/ext -Dkaraf.instances=/home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/instances -Dkaraf.home=/home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework -Dkaraf.base=/home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework -Dkaraf.data=/home/ol/CytoscapeConfiguration/3/karaf_data -Djava.io.tmpdir=/home/ol/CytoscapeConfiguration/3/karaf_data/tmp -Djava.util.logging.config.file=/home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/etc/java.util.logging.properties -Xms128M -Dcom.sun.management.jmxremote -Duser.dir=/home/ol/cy3/gui-distribution/assembly/target/cytoscape -Dcytoscape.home=/home/ol/cy3/gui-distribution/assembly/target/cytoscape -Dkaraf.startLocalConsole=true -Dkaraf.startRemoteShell=true java_command: org.cytoscape.launcher.internal.Launcher Launcher Type: SUN_STANDARD Environment Variables: JAVA_HOME=/usr/lib/jvm/java-6-sun-1.6.0.26 PATH=/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/local/bin/apache-maven-2.2.1/bin:/usr/local/bin/apache-maven-2.2.1/bin LD_LIBRARY_PATH=/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64/server:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/lib/amd64:/usr/lib/jvm/java-6-sun-1.6.0.26/jre/../lib/amd64::/home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/lib:/home/ol/cy3/gui-distribution/assembly/target/cytoscape/framework/lib SHELL=/bin/bash DISPLAY=:0 Signal Handlers: SIGSEGV: [libjvm.so+0x85f800], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGBUS: [libjvm.so+0x85f800], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGFPE: [libjvm.so+0x70e300], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGPIPE: [libjvm.so+0x70e300], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGXFSZ: [libjvm.so+0x70e300], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGILL: [libjvm.so+0x70e300], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGUSR1: SIG_DFL, sa_mask[0]=0x00000000, sa_flags=0x00000000 SIGUSR2: [libjvm.so+0x711110], sa_mask[0]=0x00000000, sa_flags=0x10000004 SIGHUP: [libjvm.so+0x710d10], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGINT: [libjvm.so+0x710d10], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGTERM: [libjvm.so+0x710d10], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 SIGQUIT: [libjvm.so+0x710d10], sa_mask[0]=0x7ffbfeff, sa_flags=0x10000004 --------------- S Y S T E M --------------- OS:6.0.7 uname:Linux 2.6.32-5-amd64 #1 SMP Mon Feb 25 00:26:11 UTC 2013 x86_64 libc:glibc 2.11.3 NPTL 2.11.3 rlimit: STACK 8192k, CORE 0k, NPROC infinity, NOFILE 1024, AS infinity load average:0.87 0.54 0.35 /proc/meminfo: MemTotal: 6085600 kB MemFree: 117392 kB Buffers: 108116 kB Cached: 3163628 kB SwapCached: 220 kB Active: 3577696 kB Inactive: 2008788 kB Active(anon): 1855068 kB Inactive(anon): 467760 kB Active(file): 1722628 kB Inactive(file): 1541028 kB Unevictable: 4 kB Mlocked: 4 kB SwapTotal: 11883512 kB SwapFree: 11878160 kB Dirty: 124528 kB Writeback: 0 kB AnonPages: 2314708 kB Mapped: 228904 kB Shmem: 8064 kB Slab: 255524 kB SReclaimable: 231468 kB SUnreclaim: 24056 kB KernelStack: 4216 kB PageTables: 36960 kB NFS_Unstable: 0 kB Bounce: 0 kB WritebackTmp: 0 kB CommitLimit: 14926312 kB Committed_AS: 4510636 kB VmallocTotal: 34359738367 kB VmallocUsed: 329596 kB VmallocChunk: 34359393276 kB HardwareCorrupted: 0 kB HugePages_Total: 0 HugePages_Free: 0 HugePages_Rsvd: 0 HugePages_Surp: 0 Hugepagesize: 2048 kB DirectMap4k: 71168 kB DirectMap2M: 6178816 kB CPU:total 8 (4 cores per cpu, 2 threads per core) family 6 model 30 stepping 5, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, ht /proc/cpuinfo: processor : 0 vendor_id : GenuineIntel cpu family : 6 model : 30 model name : Intel(R) Core(TM) i7 CPU 870 @ 2.93GHz stepping : 5 cpu MHz : 2934.000 cache size : 8192 KB physical id : 0 siblings : 8 core id : 0 cpu cores : 4 apicid : 0 initial apicid : 0 fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid bogomips : 5851.50 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: processor : 1 vendor_id : GenuineIntel cpu family : 6 model : 30 model name : Intel(R) Core(TM) i7 CPU 870 @ 2.93GHz stepping : 5 cpu MHz : 1200.000 cache size : 8192 KB physical id : 0 siblings : 8 core id : 1 cpu cores : 4 apicid : 2 initial apicid : 2 fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid bogomips : 5852.04 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: processor : 2 vendor_id : GenuineIntel cpu family : 6 model : 30 model name : Intel(R) Core(TM) i7 CPU 870 @ 2.93GHz stepping : 5 cpu MHz : 2933.000 cache size : 8192 KB physical id : 0 siblings : 8 core id : 2 cpu cores : 4 apicid : 4 initial apicid : 4 fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid bogomips : 5852.05 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: processor : 3 vendor_id : GenuineIntel cpu family : 6 model : 30 model name : Intel(R) Core(TM) i7 CPU 870 @ 2.93GHz stepping : 5 cpu MHz : 1200.000 cache size : 8192 KB physical id : 0 siblings : 8 core id : 3 cpu cores : 4 apicid : 6 initial apicid : 6 fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid bogomips : 5852.04 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: processor : 4 vendor_id : GenuineIntel cpu family : 6 model : 30 model name : Intel(R) Core(TM) i7 CPU 870 @ 2.93GHz stepping : 5 cpu MHz : 2133.000 cache size : 8192 KB physical id : 0 siblings : 8 core id : 0 cpu cores : 4 apicid : 1 initial apicid : 1 fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid bogomips : 5852.03 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: processor : 5 vendor_id : GenuineIntel cpu family : 6 model : 30 model name : Intel(R) Core(TM) i7 CPU 870 @ 2.93GHz stepping : 5 cpu MHz : 1200.000 cache size : 8192 KB physical id : 0 siblings : 8 core id : 1 cpu cores : 4 apicid : 3 initial apicid : 3 fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid bogomips : 5852.04 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: processor : 6 vendor_id : GenuineIntel cpu family : 6 model : 30 model name : Intel(R) Core(TM) i7 CPU 870 @ 2.93GHz stepping : 5 cpu MHz : 2934.000 cache size : 8192 KB physical id : 0 siblings : 8 core id : 2 cpu cores : 4 apicid : 5 initial apicid : 5 fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid bogomips : 5852.05 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: processor : 7 vendor_id : GenuineIntel cpu family : 6 model : 30 model name : Intel(R) Core(TM) i7 CPU 870 @ 2.93GHz stepping : 5 cpu MHz : 1200.000 cache size : 8192 KB physical id : 0 siblings : 8 core id : 3 cpu cores : 4 apicid : 7 initial apicid : 7 fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx smx est tm2 ssse3 cx16 xtpr pdcm sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid bogomips : 5852.03 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: Memory: 4k page, physical 6085600k(117392k free), swap 11883512k(11878160k free) vm_info: Java HotSpot(TM) 64-Bit Server VM (20.1-b02) for linux-amd64 JRE (1.6.0_26-b03), built on May 4 2011 01:13:47 by "java_re" with gcc 3.2.2 (SuSE Linux) time: Tue May 21 11:35:08 2013 elapsed time: 24 seconds I get a similar error when using just VBO's. I am running Debian Squeeze x64. EDIT: I managed to get it working with just VBO's. I will check again. EDIT 2: I managed to get it working with VAO. The solution was I forgot to add the line
gl.glVertexAttribPointer(defaultAttributeLocations.get("vColor"), 4, GL2.GL_FLOAT, false, 0, 0);
at the bottom of the top code. |
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