Hello
Actually, we just accepted a few patches but we don't actively maintain JInput. At the very beginning, we planned to integrate it somehow into JogAmp but I further decided not to do so, I'd prefer improving NEWT without relying on this library (I've being working for weeks in trying to support libinput under GNU Linux as a first step).
In my humble opinion, something is wrong in your environment, you probably don't use the same library when you debug and when you don't.