Posted by Wade Walker on Apr 27, 2012; 9:11pm
URL: https://forum.jogamp.org/plugin-with-jogl-native-libraries-and-jzy3d-api-tp3942398p3945485.html

I don't have experience with Cytoscape, but it does look like the plugins are OSGi plugins, similar to Eclipse plugins. My tutorials at http://jogamp.org/wiki/index.php/Jogl_Tutorial#Wade.27s_JOGL_tutorials do have some information about how to package a JOGL application into OSGi plugins and fragments, though it might not be directly applicable.